Package: neonPlantEcology 1.6.1
neonPlantEcology: Process NEON Plant Data for Ecological Analysis
Downloading and organizing plant presence and percent cover data from the National Ecological Observatory Network <https://www.neonscience.org>.
Authors:
neonPlantEcology_1.6.1.tar.gz
neonPlantEcology_1.6.1.zip(r-4.5)neonPlantEcology_1.6.1.zip(r-4.4)neonPlantEcology_1.6.1.zip(r-4.3)
neonPlantEcology_1.6.1.tgz(r-4.4-any)neonPlantEcology_1.6.1.tgz(r-4.3-any)
neonPlantEcology_1.6.1.tar.gz(r-4.5-noble)neonPlantEcology_1.6.1.tar.gz(r-4.4-noble)
neonPlantEcology_1.6.1.tgz(r-4.4-emscripten)neonPlantEcology_1.6.1.tgz(r-4.3-emscripten)
neonPlantEcology.pdf |neonPlantEcology.html✨
neonPlantEcology/json (API)
NEWS
| # Install 'neonPlantEcology' in R: |
| install.packages('neonPlantEcology', repos = c('https://admahood.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/admahood/neonplantecology/issues
- D14 - Plant Presence and Percent Cover Data for Domain 14
- plot_centroids - Plot centroids for the entire NEON network
- sites - National Ecological Observatory Network Core and Relocatable Terrestrial Sites
Last updated 4 months agofrom:1779fa481f. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 28 2024 |
| R-4.5-win | NOTE | Aug 28 2024 |
| R-4.5-linux | NOTE | Aug 28 2024 |
| R-4.4-win | NOTE | Aug 28 2024 |
| R-4.4-mac | NOTE | Aug 28 2024 |
| R-4.3-win | NOTE | Aug 28 2024 |
| R-4.3-mac | NOTE | Aug 28 2024 |
Exports:npe_change_native_statusnpe_cm_metadatanpe_community_matrixnpe_downloadnpe_eventID_fixernpe_groundcovernpe_heightsnpe_longformnpe_plot_centroidsnpe_site_idsnpe_summarynpe_update_subplots
Dependencies:abindaskpassbackportsbootbroomcarcarDataclassclassIntcliclustercolorspacecorrplotcowplotcpp11curldata.tableDBIDerivdigestdoBydownloaderdplyrdtplyre1071fansifarvergenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehttrisobandjsonliteKernSmoothlabelinglatticelifecyclelme4lubridatemagrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkmimeminqamodelrmunsellneonUtilitiesnlmenloptrnnetnumDerivopensslpbapplypbkrtestpermutepillarpkgconfigpolynomproxypurrrquantregR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppEigenrlangrstatixs2scalessfSparseMstringistringrsurvivalsystibbletidyrtidyselecttimechangeunitsutf8vctrsveganviridisLitewithrwk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Plant Presence and Percent Cover Data for Domain 14 | D14 |
| Change the native status code for a particular taxon at a particular site | npe_change_native_status |
| Get plot information from a community matrix | npe_cm_metadata |
| Create a species abundance or occurrence matrix | npe_community_matrix |
| Data downloader | npe_download |
| fix errors in the eventID column | npe_eventID_fixer |
| Get ground cover and other variables | npe_groundcover |
| Get heights | npe_heights |
| Convert raw NEON diversity object to longform plant cover data frame | npe_longform |
| Download and join spatial information to a neonPlantEcology output data frame | npe_plot_centroids |
| Get site ids | npe_site_ids |
| Get plant biodiversity information for NEON plots | npe_summary |
| Change subplot names | npe_update_subplots |
| Plot centroids for the entire NEON network | plot_centroids |
| Polygons of National Ecological Observatory Network Core and Relocatable Terrestrial Sites | site_polygons |
| National Ecological Observatory Network Core and Relocatable Terrestrial Sites | sites |
